TMB

New paper!

New paper by #SarahBenhaiem & @LMarescot 🤩👏 "Robustness of Eco-Epidemiological Capture-Recapture Parameter Estimates to Variation in Infection State Uncertainty" https://t.co/ZvNghUHUUY #HMM #multievent #TMB #WomenInSTEM #carnivorepapersbywomen #heynas #serengeti pic.twitter.com/VT6iStk5UW — Olivier Gimenez 🍉 (@oaggimenez) 28 août 2018

Fitting dynamic occupancy models with TMB

Following my recent attempt to [fit a HMM model to capture-recapture data with TMB](https://oliviergimenez.github.io/post/multievent_in_tmb/) and the rather estonishing outcome (the code was 300 time faster than the equivalent R code!), I was curious to add TMB to the [list of options I tried to fit dynamic occupancy models](https://oliviergimenez.github.io/post/occupancy_in_admb/). Well, the least I can say is that TMB is fast, damn fast!

Fitting HMM/multievent capture-recapture models with TMB

Following my attempts to fit a HMM model to [capture-recapture data with Rcpp](http://localhost:1313/post/multievent_in_rcpp/) and to [occupancy data with ADMB](http://localhost:1313/post/occupancy_in_admb/), a few colleagues suggested TMB as a potential alternative for several reasons (fast, allows for parallel computations, works with R, accomodates spatial stuff, easy implementation of random effects, and probably other reasons that I don't know).