occupancy

Interactive visualisation of bias in occupancy models

Interactive data visualisation of bias in occupancy models w/ flexdashboard.

Simulations from the Rota's multispecies occupancy model

How to simulate data from the Rota’s multispecies occupancy model.

Bias in occupancy models

Quick & dirty simulations to look at bias in occupancy estimates with respect to species detection for a static/single-season model.

GAM-like modelling of lynx occupancy in France

Ongoing work on a flexible spatio-temporal model for occupancy data w/ a GAM-like approach in Nimble.

Combining multiple data sources in species distribution models while accounting for spatial dependence and overfitting with penalised likelihood maximisation

New #preprint on "Combining multiple data sources in species distribution models while accounting for spatial dependence and overfitting with penalised likelihood maximisation" https://t.co/7GLRrgpo4D w/ @MoonbeamLevels & @LouvrierJulie #SDM #MachineLearning #PointProcess pic.

Jags code to fit a multistate single-season occupancy model

Quick and dirty code to fit a multistate single-season #occupancy model in Jags using a #HMM formulation, in case it's useful https://t.co/vUlrP0jjIU #JAGS #rstats w/ @ArnaudLyet pic.twitter.com/dSr0BlICb6 — Olivier Gimenez 🖖 (@oaggimenez) 13l 2019

Un article dans La Recherche sur nos travaux

🐺🔎💩 Un chouette article https://t.co/Qm0fkSX675 dans @maglarecherche sur les travaux de thèse de @LouvrierJulie sur écologie statistique, modèles de distribution d'espèce et grands carnivores - merci @BereniceRbt ! Bel exemple de collaborations @oncfs @INEE_CNRS @umontpellier pic.

Julie Louvrier submitted her PhD manuscript!

🤩🍾🥳 Well done @LouvrierJulie - Impressiiiiiiiiiiiiive work! https://t.co/wd99KZcYTy — Olivier Gimenez 🚸 (@oaggimenez) 30 septembre 2018

New paper!

🤩🐺 New paper by unstoppable @LouvrierJulie "Accounting for #misidentification and #heterogeneity in #occupancy studies using #HMMs" https://t.co/UqJfbkFjbW #teamboulet #openaccess @EcoHMM #carnivorepapersbywomen @ONCFS_officiel @umontpellier @IsiteMUSE @CNRSenLR @INEE_CNRS pic.twitter.com/YGgPNjzRUE — Olivier Gimenez 🥐 (@oaggimenez) 19 septembre18

New paper!

🤩🐱 New paper by unstoppable @LouvrierJulie "Use of ambiguous detections to improve estimates from #SDMs" in @ConBiology https://t.co/XXZFGDT7ko #teamboulet @ZiFridolin @aveamphibious #WomenInSTEM #carnivorepapersbywomen @ONCFS_officiel @umontpellier @IsiteMUSE @CNRSenLR pic.twitter.com/LkZtbswikJ — Olivier Gimenez 🍉 (@oaggimenez) 20 juillet8