Reproducible science workshop

A one-day workshop with R and RStudio

Who: Olivier Gimenez
When: 9am-4pm on March 18, 2021
Where: Zoom

Timeline

• Motivations [lecture | video]
• Manipulating data in the tidyverse [lecture | practical | solutions | video]
• Visualising data in the tidyverse [lecture | practical | solutions | video]
• Lunch break
• Writing dynamic and reproducible documents with R Markdown [lecture | practical | solutions | video]
• Versioning with Git and GitHub in RStudio [lecture | practical | video]
• Take-home messages [lecture | video]

Requirements

• Download and install Git.

• You will need a GitHub account, you can easily set up a free account here.

• Install R and RStudio

• Have Git, GitHub and RStudio talk to each other following these guidelines (section 2.2.2 Configuration only).

• Install the following R packages: tidyverse, sf, emo, janitor, palmerpenguins, usethis and lubridate. You can install them all at once by running the following code in the R command line:

install.packages(c("tidyverse", "sf", "emo", "janitor", "palmerpenguins", "usethis", "lubridate"))

Corrections

If you see mistakes or want to suggest changes, please create an issue on the source repository.

Reuse

Text and figures are licensed under Creative Commons Attribution CC BY 4.0. Any computer code (R, HTML, CSS, etc.) in slides and worksheets, including in slide and worksheet sources, is also licensed under MIT.