Data and R code for all chapters:

  1. Trajectory Reconstruction and Behavior Identification Using Geolocation Data, Marie-Pierre Etienne and Pierre Gloaguen.
  2. Detection of Eco-Evolutionary Processes in the Wild: Evolutionary Trade-Offs Between Life History Traits, Valentin Journé, Sarah Cubaynes, Julien Papaïx and Mathieu Buoro.
  3. Studying Species Demography and Distribution in Natural Conditions: Hidden Markov Models, Olivier Gimenez, Julie Louvrier, Valentin Lauret and Nina Santostasi.
  4. Inferring Mechanistic Models in Spatial Ecology Using a Mechanistic-Statistical Approach, Julien Papaïx, Samuel Soubeyrand, Olivier Bonnefon, Emily Walker, Julie Louvrier, Etienne Klein and Lionel Roques.
  5. Using Coupled Hidden Markov Chains to Estimate Colonization and Seed Bank Survival in a Metapopulation of Annual Plants, Pierre-Olivier Cheptou, Stéphane Cordeau, Sebastian Le Coz and Nathalie Peyrard.
  6. Using Latent Block Models to Detect Structure in Ecological Networks, Julie Aubert, Pierre Barbillon, Sophie Donnet and Vincent Miele.
  7. Latent Factor Models: A Tool for Dimension Reduction in Joint Species Distribution Models, Daria Bystrova, Giovanni Poggiato, Julyan Arbel and Wilfried Thuiller.
  8. The Poisson Log-Normal Model: A Generic Framework for Analyzing Joint Abundance Distributions, Julien Chiquet, Marie-Josée Cros, Mahendra Mariadassou, Nathalie Peyrard and Stéphane Robin.
  9. Supervised Component-Based Generalized Linear Regression: Method and Extensions, Frédéric Mortier, Jocelyn Chauvet, Catherine Trottier, Guillaume Cornu and Xavier Bry.
  10. Structural Equation Models for the Study of Ecosystems and Socio-Ecosystems, Fabien Laroche, Jérémy Froidevaux, Laurent Larrieu and Michel Goulard.